Advances and Clinical Practice in Pyrosequencing

Guohua Zhou (Redaktør) ; Qinxin Song (Redaktør)

The aim of this book is to improve pyrosequencing protocols as well as instrumentation for better clinical use by describing improvements and novel applications of pyrosequencing technology. Divided into five parts, the book's thirty chapters explore advances in pyrosequencing template preparation, pyrosequencing technology innovations, multiplex pyrosequencing based on barcodes, the miniaturization of pyrosequencing equipment, as well as various applications. Les mer
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Leveringstid: Sendes innen 21 dager

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The aim of this book is to improve pyrosequencing protocols as well as instrumentation for better clinical use by describing improvements and novel applications of pyrosequencing technology. Divided into five parts, the book's thirty chapters explore advances in pyrosequencing template preparation, pyrosequencing technology innovations, multiplex pyrosequencing based on barcodes, the miniaturization of pyrosequencing equipment, as well as various applications. As part of the Springer Protocols program, chapters contain the kind of detail and practical implementation advice to guarantee successful results in the lab.

Comprehensive and thorough, Advances and Clinical Practice in Pyrosequencing serves as a valuable reference for researchers who are engaged in personalized medicine, disease control, and DNA diagnosis in numerous other fields.

Fakta

Innholdsfortegnelse

Part I: Template Preparation



1. Preparation of Single-Stranded DNA for Pyrosequencing by LATE-PCR

Huiyong Yang, Chao Liang, Zhiyao Chen, Bingjie Zou, Qinxin Song, and Guohua Zhou



2. A Simplified Protocol for Preparing Pyrosequencing Templates Based on LATE-PCR Using Whole Blood as Starting Material Directly

Yunlong Liu, Haiping Wu, Hui Ye, Zhiyao Chen, Qinxin Song, Bingjie Zou, Jianzhong Rui, and Guohua Zhou



3. Improvement of LATE-PCR to Prepare Pyrosequencing Template

Qinxin Song, Huiyong Yang, Bingjie Zou, Hideki Kambara, and Guohua Zhou



4. Pyrosequencing Templates Generated by Nicking PCR Products with Nicking Endonuclease

Qinxin Song, Haiping Wu, Guohua Zhou, and Hideki Kambara



5. Pyrosequencing Templates Generated by Asymmetric Nucleic Acid Sequence-Based Amplification (Asymmetric-NASBA)

Huning Jia, Zhiyao Chen, Haiping Wu, Hui Ye, Bingjie Zou, Qinxin Song, and Guohua Zhou



6. Gel Immobilization of Acrylamide-Modified Single-Stranded DNA Template for Pyrosequencing

Pengfeng Xiao, Huan Huang, Bingjie Zou, Qinxin Song, Guohua Zhou, and Zuhong Lu



7. Multiplex PCR Based on a Universal Biotinylated Primer to Generate Templates for Pyrosequencing

Zhiyao Chen, Yunlong Liu, Hui Ye, Haiping Wu, Jinheng Li, Bingjie Zou, Qinxin Song, and Guohua Zhou



Part II: Technology Innovation



8. A Novel Pyrosequencing Principle Based on AMP-PPDK Reaction for Improving the Detection Limit



Guohua Zhou, Tomoharu Kajiyama, Mari Gotou, Akihiko Kishimoto, Shigeya Suzuki, and Hideki Kambara



9. Pyrosequencing Chemistry Coupled with Modified Primer Extension Reactions for Quantitative Detection of Allele Frequency in a Pooled Sample

Guohua Zhou, Masao Kamahori, Kazunori Okano, Gao Chuan, Kunio Harada, and Hideki Kambara



10. A Gel-Free SNP Genotyping Method Based on Pyrosequencing Chemistry Coupled with Modified Primer Extension Reactions Directly from Double-Stranded PCR Products

Guohua Zhou, Hiromi Shirakura, Masao Kamahori, Kazunori Okano, Keiichi Nagai, and Hideki Kambara



11. Improvement of Pyrosequencing to Allow Multiplex SNP Typing in a Pyrogram

Guohua Zhou, Mari Gotou, Tomoharu Kajiyama, and Hideki Kambara



12. Improvement of P

yrosequencing-Sensitive Based on the Capture of Free Adenosine 5'-Phosphosulfate with Adenosine Triphosphate Sulfurylase

Haiping Wu, Wenjuan Wu, Zhiyao Chen, Weipeng Wang, Bingjie Zou, Qinxin Song, Guohua Zhou, and Hideki Kambara



13. Using Polymerase Preference Index to Design imLATE-PCR Primers for an Efficient Pyrosequencing

Qinxin Song, Xiemin Qi, Yiyun Shen, Yiru Jin, Bingjie Zou, and Guohua Zhou



Part III: Reagents Preparation



14. Preparation of Thermalstable Biotinlyted Firefly Luciferase and Its Application in Pyrosequencing

Shuhui Zhu, Bingjie Zou, Haiping Wu, Yinjiao Ma, Ying Chen, Qinxin Song, and Guohua Zhou



15. Expression of Thermostable Recombinant Luciola lateralis Luciferase and Its Function on Setting up of Heat-Stable Pyrosequencing System

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sp; Shu Xu, Bingjie Zou, Qinxin Song, and Guohua Zhou



16. Expression and Purification of ATP Sulfurylase from Saccharomyces cerevisias in Escherichia coli and Its Application in Pyrosequencing

Juan Luo, Wenjuan Wu, Bingjie Zou, Qinxin Song, and Guohua Zhou



17. Characterization of Recombinant Escherichia coli Single-Strand Binding Protein and Its Application in Pyrosequencing

Jianping Wang, Bingjie Zou, Qinxin Song, and Guohua Zhou



18. Expression of PPDK from Microbispora Rosea Subsp. aerata in E. coli and Its Application in Pyrosequencing

Bingjie Zou, Qinxin Song, and Guohua Zhou



Part IV: Pyrosequencing-Bas

ed Bio-Barcodes



19. Construction of 3-Plex Barcodes for Differential Gene Expression Analysis with Pyrosequencing

Xiaodan Zhang, Haiping Wu, Zhiyao Chen, Guohua Zhou, and Hideki Kambara



20. Development of Pyrosequencing-Based Multiplex Bioassay by Designing Barcodes Encoded with Artificially Designed Sequences

Zhiyao Chen, Xiaodan Zhang, Xiqun Liu, Bingjie Zou, Haiping Wu, Qinxin Song, Hideki Kambara, and Guohua Zhou



21. Quantitatively Discriminating Multiplexed LAMP Products with Pyrosequencing-Based Bio-Barcodes

Chao Liang, Yanan Chu, Sijia Cheng, Haiping Wu, Bingjie Zou, Qinxin Song, and Guohua Zhou



22. Multiplex Ligation-Dependent Sequence-Tag Amplification Coupled with Pyrosequencing for Copy Number Variation (CNV) Analysis



; Haiping Wu, Bingjie Zou, Qinxin Song, and Guohua Zhou



Part V: Instrumentation



23. Pyrosequencer Miniaturized with Capillaries to Deliver Deoxynucleotides

Guohua Zhou, Masao Kamahori, Kazunori Okano, Kunio Harada, and Hideki Kambara



24. Pyrosequencer with a Sensor of Photo-Diode Array

Hideki Kambara and Guohua Zhou



25. Pyrosequencing on Acryl-Modified Glass Chip

Huan Huang, Haiping Wu, Pengfeng Xiao, Bingjie Zou, Qinxin Song, and Guohua Zhou



26. Pyrosequencing On-Chip Based on a Gel-Based Solid-Phase Amplification

Huan Huang, Pengfeng Xiao, Zongtai Qi, Bingjie Zou, Qinxin S

ong, and Guohua Zhou



Part VI: Clinical Practice



27. Prenatal Diagnosis of Trisomy 21 by Quantitatively Pyrosequencing Heterozygotes Using Amniotic Fluid as Starting Material of PCR

Hui Ye, Haiping Wu, Huan Huang, Yunlong Liu, Bingjie Zou, Qinxin Song, and Guohua Zhou



28. Comparative Gene Expression Analysis of Breast Cancer-Related Genes by Multiplex Pyrosequencing Coupled with Sequence Barcodes

Qinxin Song, Hua Jing, Haiping Wu, Bingjie Zou, Guohua Zhou, and Hideki Kambara



29. MicroRNA Quantification by Pyrosequencing with a Sequence-Tagged Stem-Loop RT Primer

Hua Jing, Qinxin Song, Zhiyao Chen, Bingjie Zou, Minsheng Zhu, Guohua Zhou, and Hideki Kambara



30. Analysis of Genetically Modified Organisms by Pyrosequencing

on a Portable Photodiode-Based Bioluminescence Sequencer

Qinxin Song, Guijiang Wei, Bingjie Zou, and Guohua Zhou



31. Genotyping of Pathogenic Serotypes of S. Suis with Pyrosequencing

Huiyong Yang, Huan Huang, Haiping Wu, Bingjie Zou, Qinxin Song, Guohua Zhou, and Hideki Kambara



32. Differential Gene Expression Analysis of Breast Cancer by Combining Sequence-Tagged Reverse-Transcription PCR with Pyrosequencing

Xiaodan Zhang, Haiping Wu, Zhiyao Chen, Bingjie Zou, Qinxin Song, and Guohua Zhou



33. Detection of Avian Influenza A Virus by Pyrosequencing

Weipeng Wang, Haiping Wu, Bingjie Zou, Qinxin Song, and Guohua Zhou



34. Genotyping of Alcohol Dehydrogenase Gene by Pyroseque

ncing Coupled with Improved LATE-PCR Using Human Whole Blood as Starting Material

Zheng Xiang, Yunlong Liu, Xiaoqing Xing, Bingjie Zou, Qinxin Song, and Guohua Zhou



35. Pyrosequencing on a Single Cell

Qinxin Song, Huiyong Yang, Bingjie Zou, Hideki Kambara, and Guohua Zhou